Package: genekitr 1.2.9

Yunze Liu

genekitr: Gene Analysis Toolkit

Provides features for searching, converting, analyzing, plotting, and exporting data effortlessly by inputting feature IDs. Enables easy retrieval of feature information, conversion of ID types, gene enrichment analysis, publication-level figures, group interaction plotting, and result export in one Excel file for seamless sharing and communication.

Authors:Yunze Liu [aut, cre]

genekitr_1.2.9.tar.gz
genekitr_1.2.9.zip(r-4.7)genekitr_1.2.9.zip(r-4.6)genekitr_1.2.9.zip(r-4.5)
genekitr_1.2.9.tgz(r-4.6-any)genekitr_1.2.9.tgz(r-4.5-any)
genekitr_1.2.9.tar.gz(r-4.7-any)genekitr_1.2.9.tar.gz(r-4.6-any)
genekitr_1.2.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
genekitr/json (API)

# Install 'genekitr' in R:
install.packages('genekitr', repos = c('https://ganglilab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ganglilab/genekitr/issues

Datasets:
  • biocOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • deg - Datasets geneList entrez gene list with decreasing fold change value
  • ensOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • geneList - Datasets geneList entrez gene list with decreasing fold change value
  • hsapiens_probe_platform - Datasets geneList entrez gene list with decreasing fold change value
  • keggOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • msig_category - Datasets geneList entrez gene list with decreasing fold change value
  • msig_org - Datasets geneList entrez gene list with decreasing fold change value

On CRAN:

Conda:

enrichment-analysisgeneid-converterplotting

5.94 score 63 stars 1 packages 92 scripts 561 downloads 19 exports 142 dependencies

Last updated from:97a68ab624. Checks:8 OK, 1 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK335
source / vignettesOK260
linux-release-x86_64OK307
macos-release-arm64OK183
macos-oldrel-arm64ERROR154
windows-develOK250
windows-releaseOK247
windows-oldrelOK233
wasm-releaseOK178

Exports:%>%as.enrichdatexpoSheetgenGSEAgenInfogenORAgetPubmedimportCPimportPantherimportShinygoplot_themeplotEnrichplotEnrichAdvplotGSEAplotVennplotVolcanosimGOtransIdtransProbe

Dependencies:aisdkAnnotationDbiapeaplotaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64bitopsblobbslibcachemcallrcliclusterclusterProfilercpp11crayoncurlDBIdigestDOSEdplyrenrichitenrichploteuropepmcevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverfsfstfstcoregdtoolsgenericsgenesetggforceggfunggiraphggnewscaleggplot2ggplotifyggraphggrepelggtangleggtreeggvennglueGO.dbGOSemSimgraphlayoutsgridExtragridGraphicsgsongtablehighrhmshtmltoolshtmlwidgetshttrhttr2igraphIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemimenlmeopensslopenxlsxotelpatchworkpillarpkgconfigplyrpngpolyclipprettyunitsprocessxprogresspspurrrqvalueR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRCurlreshape2rlangrmarkdownRSQLiteS4VectorsS7sassscalesscatterpieSeqinfostringistringrsyssystemfontstibbletidydrtidygraphtidyrtidyselecttidytreetinytextreeiotriebeardtweenrurltoolsutf8vctrsviridisviridisLitewithrxfunxml2XVectoryamlyulab.utilszip