Package: genekitr 1.2.9

Yunze Liu

genekitr: Gene Analysis Toolkit

Provides features for searching, converting, analyzing, plotting, and exporting data effortlessly by inputting feature IDs. Enables easy retrieval of feature information, conversion of ID types, gene enrichment analysis, publication-level figures, group interaction plotting, and result export in one Excel file for seamless sharing and communication.

Authors:Yunze Liu [aut, cre]

genekitr_1.2.9.tar.gz
genekitr_1.2.9.zip(r-4.7)genekitr_1.2.9.zip(r-4.6)genekitr_1.2.9.zip(r-4.5)
genekitr_1.2.9.tgz(r-4.6-any)genekitr_1.2.9.tgz(r-4.5-any)
genekitr_1.2.9.tar.gz(r-4.7-any)genekitr_1.2.9.tar.gz(r-4.6-any)
genekitr_1.2.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
genekitr/json (API)

# Install 'genekitr' in R:
install.packages('genekitr', repos = c('https://ganglilab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ganglilab/genekitr/issues

Datasets:
  • biocOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • deg - Datasets geneList entrez gene list with decreasing fold change value
  • ensOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • geneList - Datasets geneList entrez gene list with decreasing fold change value
  • hsapiens_probe_platform - Datasets geneList entrez gene list with decreasing fold change value
  • keggOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • msig_category - Datasets geneList entrez gene list with decreasing fold change value
  • msig_org - Datasets geneList entrez gene list with decreasing fold change value

On CRAN:

Conda:

enrichment-analysisgeneid-converterplotting

5.84 score 61 stars 1 packages 76 scripts 395 downloads 19 exports 140 dependencies

Last updated from:97a68ab624. Checks:8 OK, 1 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK292
source / vignettesOK303
linux-release-x86_64OK289
macos-release-arm64OK212
macos-oldrel-arm64ERROR266
windows-develOK606
windows-releaseOK660
windows-oldrelOK627
wasm-releaseOK189

Exports:%>%as.enrichdatexpoSheetgenGSEAgenInfogenORAgetPubmedimportCPimportPantherimportShinygoplot_themeplotEnrichplotEnrichAdvplotGSEAplotVennplotVolcanosimGOtransIdtransProbe

Dependencies:aisdkAnnotationDbiapeaplotaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64bitopsblobbslibcachemcallrcliclusterclusterProfilercpp11crayoncurlDBIdigestDOSEdplyrenrichitenrichploteuropepmcevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverfsfstfstcoregdtoolsgenericsgenesetggforceggfunggiraphggnewscaleggplot2ggplotifyggraphggrepelggtangleggtreeggvennglueGO.dbGOSemSimgraphlayoutsgridExtragridGraphicsgsongtablehighrhmshtmltoolshtmlwidgetshttrhttr2igraphIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemimenlmeopensslopenxlsxpatchworkpillarpkgconfigplyrpngpolyclipprettyunitsprocessxprogresspspurrrqvalueR6rappdirsRColorBrewerRcppRcppArmadilloRCurlreshape2rlangrmarkdownRSQLiteS4VectorsS7sassscalesscatterpieSeqinfostringistringrsyssystemfontstibbletidydrtidygraphtidyrtidyselecttidytreetinytextreeiotriebeardtweenrurltoolsutf8vctrsviridisviridisLitewithrxfunxml2XVectoryamlyulab.utilszip