Package: genekitr 1.3.0

Yunze Liu

genekitr: Gene Analysis Toolkit

Provides features for searching, converting, analyzing, plotting, and exporting data effortlessly by inputting feature IDs. Enables easy retrieval of feature information, conversion of ID types, gene enrichment analysis, publication-level figures, group interaction plotting, and result export in one Excel file for seamless sharing and communication.

Authors:Yunze Liu [aut, cre]

genekitr_1.3.0.tar.gz
genekitr_1.3.0.zip(r-4.7-any)genekitr_1.3.0.zip(r-4.6-any)genekitr_1.3.0.zip(r-4.5-any)
genekitr_1.3.0.tgz(r-4.6-any)genekitr_1.3.0.tgz(r-4.5-any)
genekitr_1.3.0.tar.gz(r-4.7-any)genekitr_1.3.0.tar.gz(r-4.6-any)
genekitr_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
genekitr/json (API)

# Install 'genekitr' in R:
install.packages('genekitr', repos = c('https://ganglilab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ganglilab/genekitr/issues

Datasets:
  • biocOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • deg - Datasets geneList entrez gene list with decreasing fold change value
  • ensOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • geneList - Datasets geneList entrez gene list with decreasing fold change value
  • hsapiens_probe_platform - Datasets geneList entrez gene list with decreasing fold change value
  • keggOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • msig_category - Datasets geneList entrez gene list with decreasing fold change value
  • msig_org - Datasets geneList entrez gene list with decreasing fold change value

On CRAN:

Conda:

enrichment-analysisgeneid-converterplotting

5.98 score 63 stars 1 packages 102 scripts 645 downloads 19 exports 143 dependencies

Last updated from:b7130371e0. Checks:7 OK, 2 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK310
source / vignettesOK270
linux-releaseOK259
macos-releaseOK215
macos-oldrelERROR178
windows-develOK230
windows-releaseOK248
windows-oldrelERROR244
wasm-releaseOK156

Exports:%>%as.enrichdatexpoSheetgenGSEAgenInfogenORAgetPubmedimportCPimportPantherimportShinygoplot_themeplotEnrichplotEnrichAdvplotGSEAplotVennplotVolcanosimGOtransIdtransProbe

Dependencies:aisdkAnnotationDbiapeaplotaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsBiostringsbitbit64bitopsblobbslibcachemcallrcliclusterclusterProfilercpp11crayoncurlDBIdigestDOSEdplyrenrichitenrichploteuropepmcevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverfsfstfstcoregdtoolsgenericsgenesetggforceggfunggiraphggnewscaleggplot2ggplotifyggraphggrepelggtangleggtreeggvennglueGO.dbGOSemSimgraphlayoutsgridExtragridGraphicsgsongtablehighrhmshtmltoolshtmlwidgetshttrhttr2igraphIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemimenlmeopensslopenxlsxotelpatchworkpillarpkgconfigplyrpngpolyclipprettyunitsprocessxprogresspspurrrqvalueR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRCurlreshape2rlangrmarkdownRSQLiteS4VectorsS7sassscalesscatterpieSeqinfostringistringrsyssystemfontstibbletidydrtidygraphtidyrtidyselecttidytreetinytextreeiotriebeardtweenrurltoolsutf8vctrsviridisviridisLitewithrxfunxml2XVectoryamlyulab.utilszip