Package: genekitr 1.2.9

Yunze Liu

genekitr: Gene Analysis Toolkit

Provides features for searching, converting, analyzing, plotting, and exporting data effortlessly by inputting feature IDs. Enables easy retrieval of feature information, conversion of ID types, gene enrichment analysis, publication-level figures, group interaction plotting, and result export in one Excel file for seamless sharing and communication.

Authors:Yunze Liu [aut, cre]

genekitr_1.2.9.tar.gz
genekitr_1.2.9.zip(r-4.5)genekitr_1.2.9.zip(r-4.4)
genekitr_1.2.9.tgz(r-4.5-any)genekitr_1.2.9.tgz(r-4.4-any)
genekitr_1.2.9.tar.gz(r-4.5-noble)genekitr_1.2.9.tar.gz(r-4.4-noble)
genekitr_1.2.9.tgz(r-4.4-emscripten)
genekitr.pdf |genekitr.html✨
genekitr/json (API)

# Install 'genekitr' in R:
install.packages('genekitr', repos = c('https://ganglilab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ganglilab/genekitr/issues

Datasets:
  • biocOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • deg - Datasets geneList entrez gene list with decreasing fold change value
  • ensOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • geneList - Datasets geneList entrez gene list with decreasing fold change value
  • hsapiens_probe_platform - Datasets geneList entrez gene list with decreasing fold change value
  • keggOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • msig_category - Datasets geneList entrez gene list with decreasing fold change value
  • msig_org - Datasets geneList entrez gene list with decreasing fold change value

On CRAN:

Conda:

enrichment-analysisgeneid-converterplotting

6.00 score 56 stars 1 packages 24 scripts 797 downloads 19 exports 134 dependencies

Last updated 3 months agofrom:97a68ab624. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 07 2025
R-4.5-winOKMar 07 2025
R-4.5-macOKMar 07 2025
R-4.5-linuxOKMar 07 2025
R-4.4-winOKMar 07 2025
R-4.4-macOKMar 07 2025
R-4.4-linuxOKMar 07 2025

Exports:%>%as.enrichdatexpoSheetgenGSEAgenInfogenORAgetPubmedimportCPimportPantherimportShinygoplot_themeplotEnrichplotEnrichAdvplotGSEAplotVennplotVolcanosimGOtransIdtransProbe

Dependencies:AnnotationDbiapeaplotaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobcachemcliclusterProfilercodetoolscolorspacecowplotcpp11crayoncurldata.tableDBIdigestDOSEdplyrenrichploteuropepmcfansifarverfastmapfastmatchfgseaformatRfsfstfstcorefutile.loggerfutile.optionsgenericsgenesetGenomeInfoDbGenomeInfoDbDataggforceggfunggnewscaleggplot2ggplotifyggraphggrepelggtangleggtreeggvennglueGO.dbGOSemSimgraphlayoutsgridExtragridGraphicsgsongtablehmshttrigraphIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslopenxlsxpatchworkpillarpkgconfigplogrplyrpngpolyclipprettyunitsprogresspurrrqvalueR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadilloRcppEigenRCurlreshape2rlangRSQLiteS4VectorsscalesscatterpiesnowstringistringrsyssystemfontstibbletidygraphtidyrtidyselecttidytreetreeiotriebeardtweenrUCSC.utilsurltoolsutf8vctrsviridisviridisLitewithrxml2XVectoryulab.utilszip