Package: genekitr 1.2.9

Yunze Liu

genekitr: Gene Analysis Toolkit

Provides features for searching, converting, analyzing, plotting, and exporting data effortlessly by inputting feature IDs. Enables easy retrieval of feature information, conversion of ID types, gene enrichment analysis, publication-level figures, group interaction plotting, and result export in one Excel file for seamless sharing and communication.

Authors:Yunze Liu [aut, cre]

genekitr_1.2.9.tar.gz
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genekitr.pdf |genekitr.html✨
genekitr/json (API)

# Install 'genekitr' in R:
install.packages('genekitr', repos = c('https://ganglilab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ganglilab/genekitr/issues

Datasets:
  • biocOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • deg - Datasets geneList entrez gene list with decreasing fold change value
  • ensOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • geneList - Datasets geneList entrez gene list with decreasing fold change value
  • hsapiens_probe_platform - Datasets geneList entrez gene list with decreasing fold change value
  • keggOrg_name - Datasets geneList entrez gene list with decreasing fold change value
  • msig_category - Datasets geneList entrez gene list with decreasing fold change value
  • msig_org - Datasets geneList entrez gene list with decreasing fold change value

On CRAN:

enrichment-analysisgeneid-converterplotting

6.00 score 55 stars 1 packages 24 scripts 537 downloads 19 exports 134 dependencies

Last updated 2 months agofrom:97a68ab624. Checks:6 OK, 2 FAILURE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 05 2025
R-4.5-winOKFeb 05 2025
R-4.5-macOKFeb 05 2025
R-4.5-linuxOKFeb 05 2025
R-4.4-winOKFeb 05 2025
R-4.4-macOKFeb 05 2025
R-4.3-winOUTDATEDDec 09 2024
R-4.3-macOUTDATEDDec 09 2024

Exports:%>%as.enrichdatexpoSheetgenGSEAgenInfogenORAgetPubmedimportCPimportPantherimportShinygoplot_themeplotEnrichplotEnrichAdvplotGSEAplotVennplotVolcanosimGOtransIdtransProbe

Dependencies:AnnotationDbiapeaplotaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobcachemcliclusterProfilercodetoolscolorspacecowplotcpp11crayoncurldata.tableDBIdigestDOSEdplyrenrichploteuropepmcfansifarverfastmapfastmatchfgseaformatRfsfstfstcorefutile.loggerfutile.optionsgenericsgenesetGenomeInfoDbGenomeInfoDbDataggforceggfunggnewscaleggplot2ggplotifyggraphggrepelggtangleggtreeggvennglueGO.dbGOSemSimgraphlayoutsgridExtragridGraphicsgsongtablehmshttrigraphIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslopenxlsxpatchworkpillarpkgconfigplogrplyrpngpolyclipprettyunitsprogresspurrrqvalueR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadilloRcppEigenRCurlreshape2rlangRSQLiteS4VectorsscalesscatterpiesnowstringistringrsyssystemfontstibbletidygraphtidyrtidyselecttidytreetreeiotriebeardtweenrUCSC.utilsurltoolsutf8vctrsviridisviridisLitewithrxml2XVectoryulab.utilszip